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1

A primer on gene expression and microarrays for machine learning researchers

Winston Patrick Kuo, Eun-Young Kim, Jeff Trimarchi, Tor-Kristian Jenssen, Staal A. Vinterbo, Lucila Ohno-Machado

Journal:

Journal of Biomedical Informatics

Year:

2004

Language:

english

File:

PDF, 945 KB

english, 2004

2

Comparison of hybridization-based and sequencing-based gene expression technologies on biological replicates

Fang Liu, Tor-Kristian Jenssen, Jeff Trimarchi, Claudio Punzo, Connie L Cepko, Lucila Ohno-Machado, Eivind Hovig, Winston Patrick Kuo

Journal:

Year:

2007

Language:

english

File:

PDF, 891 KB

english, 2007

3

Engineering Anisotropic Biomimetic Fibrocartilage Microenvironment by Bioprinting Mesenchymal Stem Cells in Nanoliter Gel Droplets

Gurkan, Umut A., El Assal, Rami, Yildiz, Simin E., Sung, Yuree, Trachtenberg, Alexander J., Kuo, Winston P., Demirci, Utkan

Journal:

Molecular Pharmaceutics

Year:

2014

Language:

english

File:

PDF, 4.74 MB

english, 2014

4

SPIE Proceedings [SPIE MOEMS-MEMS - San Francisco, California (Saturday 23 January 2010)] Advanced Fabrication Technologies for Micro/Nano Optics and Photonics III - Fabrication of corrugated long-period fiber gratings by wet bulk micromachining

Chiang, Chia-Chin, Schoenfeld, Winston V., Wang, Jian J., Tsai, Liren, Chang, Hao-Jhen, Loncar, Marko, Suleski, Thomas J., Lin, Chih-Lang, Kuo, Jin-Shun

Year:

2010

Language:

english

File:

PDF, 4.90 MB

english, 2010

5

Scalable Face Track Retrieval in Video Archives using Bag-of-Faces Sparse Representation

Chen, Bor-Chun, Chen, Yan-Ying, Kuo, Yin-Hsi, Ngo, Thanh Duc, Le, Duy-Dinh, Satoh, Shinichi, Hsu, Winston H.

Journal:

IEEE Transactions on Circuits and Systems for Video Technology

Year:

2016

Language:

english

File:

PDF, 3.85 MB

english, 2016

6

SPIE Proceedings [SPIE SPIE OPTO - San Francisco, California, United States (Saturday 13 February 2016)] Advanced Fabrication Technologies for Micro/Nano Optics and Photonics IX - WGP structures patterned by Lloyd's mirror laser interference lithography system integrate into MEMS physical sensor device

von Freymann, Georg, Schoenfeld, Winston V., Rumpf, Raymond C., Tseng, Kuo-Chun, Hong, Shuo-Ting, Lin, Te-Hsun, Chuang, Tzu-Han, Fu, Chien-Chung

Year:

2016

Language:

english

File:

PDF, 730 KB

english, 2016

7

City-View Image Location Identification by Multiple Geo-Social Media and Graph-Based Image Cluster Refinement

Lee, Wen-Yu, Kuo, Yin-Hsi, Hsu, Winston H.

Journal:

Journal of Visual Communication and Image Representation

Year:

2016

Language:

english

File:

PDF, 1.53 MB

english, 2016

8

[Methods in Molecular Biology] Extracellular Vesicles Volume 1660 || Isolation of Extracellular Vesicles from Breast Milk

Kuo, Winston Patrick, Jia, Shidong

Year:

2017

Language:

english

File:

PDF, 67 KB

english, 2017

9

[Methods in Molecular Biology] Extracellular Vesicles Volume 1660 || Isolation of Extracellular Vesicles in Saliva Using Density Gradient Ultracentrifugation

Kuo, Winston Patrick, Jia, Shidong

Year:

2017

Language:

english

File:

PDF, 182 KB

english, 2017

10

[Methods in Molecular Biology] Extracellular Vesicles Volume 1660 || An Integrated Double-Filtration Microfluidic Device for Detection of Extracellular Vesicles from Urine for Bladder Cancer Diagnosis

Kuo, Winston Patrick, Jia, Shidong

Year:

2017

Language:

english

File:

PDF, 380 KB

english, 2017

11

[Methods in Molecular Biology] Extracellular Vesicles Volume 1660 || Protocol for Exosome Isolation from Small Volume of Ovarian Follicular Fluid: Evaluation of Ultracentrifugation and Commercial Kits

Kuo, Winston Patrick, Jia, Shidong

Year:

2017

Language:

english

File:

PDF, 492 KB

english, 2017

12

[Methods in Molecular Biology] Extracellular Vesicles Volume 1660 ||

Kuo, Winston Patrick, Jia, Shidong

Year:

2017

Language:

english

File:

PDF, 11.13 MB

english, 2017

13

Validation of claims-based algorithms for pulmonary arterial hypertension

Papani, Ravikanth, Sharma, Gulshan, Agarwal, Amitesh, Callahan, Sean J., Chan, Winston J., Kuo, Yong-Fang, Shim, Yun M., Mihalek, Andrew D., Duarte, Alexander G.

Journal:

Pulmonary Circulation

Year:

2018

Language:

english

File:

PDF, 303 KB

english, 2018

14

Whole genome microarray analysis of chicken embryo facial prominences

Marcela Buchtová, Winston Patrick Kuo, Suresh Nimmagadda, Shari L. Benson, Poongodi Geetha-Loganathan, Cairine Logan, Timothy Au-Yeung, Eric Chiang, Katherine Fu, Joy M. Richman

Journal:

Developmental Dynamics

Year:

2010

Language:

english

File:

PDF, 532 KB

english, 2010

15

Thermal stabilization of tissues and the preservation of protein phosphorylation states for two-dimensional gel electrophoresis

Gary B. Smejkal, Chiara Rivas-Morello, Jae-Hyung Robert Chang, Emily Freeman, Alexander J. Trachtenberg, Alexander Lazarev, Alexander R. Ivanov, Winston P. Kuo

Journal:

ELECTROPHORESIS

Year:

2011

Language:

english

File:

PDF, 379 KB

english, 2011

16

Fibrin glue mixed with gelatin/hyaluronic acid/chondroitin-6-sulfate tri-copolymer for articular cartilage tissue engineering: The results of real-time polymerase chain reaction

Cheng-Hung Chou, Winston T.K. Cheng, Tzong-Fu Kuo, Jui-Sheng Sun, Feng-Huei Lin, Jui-Che Tsai

Journal:

Journal of Biomedical Materials Research Part A

Year:

2007

Language:

english

File:

PDF, 1.01 MB

english, 2007

17

Microarray profiling reveals the integrated stress response is activated by halofuginone in mammary epithelial cells

Yana G Kamberov, Jihoon Kim, Ralph Mazitschek, Winston P Kuo, Malcolm Whitman

Journal:

BMC Research Notes

Year:

2011

Language:

english

File:

PDF, 546 KB

english, 2011

18

Boosting image object retrieval and indexing by automatically discovered pseudo-objects

Kuan-Ting Chen, Kuan-Hung Lin, Yin-Hsi Kuo, Yi-Lun Wu, Winston H. Hsu

Journal:

Journal of Visual Communication and Image Representation

Year:

2010

Language:

english

File:

PDF, 1.82 MB

english, 2010

19

Effects of nicotine on gene expression and osseointegration in rats

Seiichi Yamano, Joel A. Berley, Winston P. Kuo, German O. Gallucci, Hans-Peter Weber, Cortino Sukotjo

Journal:

Clinical Oral Implants Research

Year:

2010

Language:

english

File:

PDF, 359 KB

english, 2010

20

Angiogenic heterogeneity in head and neck squamous cell carcinoma: biological and therapeutic implications

Hasina, Rifat, Whipple, Mark E, Martin, Leslie E, Kuo, Winston Patrick, Ohno-Machado, Lucila, Lingen, Mark W

Journal:

Laboratory Investigation

Year:

2008

Language:

english

File:

PDF, 481 KB

english, 2008

21

The calmodulin pathway and evolution of elongated beak morphology in Darwin's finches

Abzhanov, Arhat, Kuo, Winston P., Hartmann, Christine, Grant, B. Rosemary, Grant, Peter R., Tabin, Clifford J.

Journal:

Year:

2006

Language:

english

File:

PDF, 584 KB

english, 2006

22

A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies

Kuo, Winston Patrick, Liu, Fang, Trimarchi, Jeff, Punzo, Claudio, Lombardi, Michael, Sarang, Jasjit, Whipple, Mark E, Maysuria, Malini, Serikawa, Kyle, Lee, Sun Young

Journal:

Nature Biotechnology

Year:

2006

Language:

english

File:

PDF, 301 KB

english, 2006

23

Gene expression profiling by DNA microarrays and its application to dental research

Winston Patrick Kuo, Mark E. Whipple, Stephen T. Sonis, Lucila Ohno-Machado, Tor-Kristian Jenssen

Journal:

Year:

2002

Language:

english

File:

PDF, 258 KB

english, 2002

24

Error margin analysis for feature gene extraction

Chi Kin Chow, Hai Long Zhu, Jessica Lacy, Winston P Kuo

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 890 KB

english, 2010

25

AnyExpress: Integrated toolkit for analysis of cross-platform gene expression data using a fast interval matching algorithm

Jihoon Kim, Kiltesh Patel, Hyunchul Jung, Winston P Kuo, Lucila Ohno-Machado

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 1.28 MB

english, 2011

26

A potential role for intragenic miRNAs on their hosts' interactome

Ludwig Christian G Hinske, Pedro AF Galante, Winston P Kuo, Lucila Ohno-Machado

Journal:

Year:

2010

Language:

english

File:

PDF, 913 KB

english, 2010

27

Validation of oligoarrays for quantitative exploration of the transcriptome

Vigdis Nygaard, Fang Liu, Marit Holden, Winston P Kuo, Jeff Trimarchi, Lucila Ohno-Machado, Connie L Cepko, Arnoldo Frigessi, Ingrid K Glad, A Mark van de Wiel, Eivind Hovig, Heidi Lyng

Journal:

Year:

2008

Language:

english

File:

PDF, 810 KB

english, 2008

28

Peripheral arterial occlusive disease: Global gene expression analyses suggest a major role for immune and inflammatory responses

Shijun Fu, Haiguang Zhao, Jiantao Shi, Arhat Abzhanov, Keith Crawford, Lucila Ohno-Machado, Jianqin Zhou, Yanzhi Du, Winston Patrick Kuo, Ji Zhang, Mier Jiang, Jason Gang Jin

Journal:

Year:

2008

Language:

english

File:

PDF, 3.81 MB

english, 2008

29

Comparison of in-gel protein separation techniques commonly used for fractionation in mass spectrometry-based proteomic profiling

Mohieddin Jafari, Vincent Primo, Gary B. Smejkal, Eugene V. Moskovets, Winston P. Kuo, Alexander R. Ivanov

Journal:

ELECTROPHORESIS

Year:

2012

Language:

english

File:

PDF, 1.18 MB

english, 2012

30

Differentially expressed transcripts in shell glands from low and high egg production strains of chickens using cDNA microarrays

Kuo-Tai Yang, Chia-Yu Lin, Jong-Shian Liou, Yi-Hsing Fan, Shiow-Her Chiou, Chang-Wen Huang, Chean-Ping Wu, En-Chung Lin, Chih-Feng Chen, Yen-Pai Lee, Wen-Chuan Lee, Shih-Torng Ding, Winston Teng-Kuei

Journal:

Animal Reproduction Science

Year:

2007

Language:

english

File:

PDF, 483 KB

english, 2007

31

Deciphering gene expression profiles generated from DNA microarrays and their applications in oral medicine

Winston Patrick Kuo, Mark E Whipple, Joel B Epstein, Tor-Kristian Jenssen, Gustavo S Santos, Lucila Ohno-Machado, Stephen T Sonis

Journal:

Oral Surgery, Oral Medicine, Oral Pathology, Oral Radiology, and Endodontology

Year:

2004

Language:

english

File:

PDF, 575 KB

english, 2004

32

Recombinant porcine lactoferrin expressed in the milk of transgenic mice protects neonatal mice from a lethal challenge with enterovirus type 71

Hsiao-Ling Chen, Li-Chung Wang, Chi-Hsuan Chang, Chih-Ching Yen, Winston T.K. Cheng, Shinn-Chih Wu, Che-Ming Hung, Meng-Fu Kuo, Chuan-Mu Chen

Journal:

Year:

2008

Language:

english

File:

PDF, 898 KB

english, 2008

33

DNA microarrays in otolaryngology-head and neck surgery

Mark Eliot Whipple, Winston Patrick Kuo

Journal:

Otolaryngology - Head and Neck Surgery

Year:

2002

Language:

english

File:

PDF, 110 KB

english, 2002

34

Locally aggressive solitary fibrous tumor in the infraorbital region: A case report and review of the literature

Winston Patrick Kuo, David A. Sirois, Charles W. Pemble

Journal:

Oral Surgery, Oral Medicine, Oral Pathology, Oral Radiology, and Endodontology

Year:

2001

Language:

english

File:

PDF, 187 KB

english, 2001

35

Downregulated gene expression of TGF-βs in diabetic oral wound healing

Yamano, Seiichi, Kuo, Winston P., Sukotjo, Cortino

Journal:

Journal of Cranio-Maxillofacial Surgery

Year:

2013

Language:

english

File:

PDF, 924 KB

english, 2013

36

Unsupervised Semantic Feature Discovery for Image Object Retrieval and Tag Refinement

Kuo, Yin-Hsi, Cheng, Wen-Huang, Lin, Hsuan-Tien, Hsu, Winston H.

Journal:

IEEE Transactions on Multimedia

Year:

2012

Language:

english

File:

PDF, 2.08 MB

english, 2012

37

Use of carbamazepine and lamotrigine in a Taiwanese diabetic patient with bipolar disorder

Chao, Kuo-Chun, Lu, Mong-Liang, Shen, Winston W.

Journal:

Psychiatry and Clinical Neurosciences

Year:

2012

Language:

english

File:

PDF, 41 KB

english, 2012

38

MicroSAGE is highly representative and reproducible but reveals major differences in gene expression among samples obtained from similar tissues

Seth Blackshaw, Winston P Kuo, Peter J Park, Motokazu Tsujikawa…

Journal:

Year:

2003

Language:

english

File:

PDF, 511 KB

english, 2003

39

CYP1A2 genetic polymorphisms are associated with early antidepressant escitalopram metabolism and adverse reactions

Kuo, Hsiang-Wei, Liu, Shu Chih, Tsou, Hsiao-Hui, Liu, Sheng-Wen, Lin, Keh-Ming, Lu, Shao-Chun, Hsiao, Mei-Chun, Hsiao, Chin-Fu, Liu, Chia-Yih, Chen, Chia-Hui, Lu, Mong-Liang, Shen, Winston W, Tang, Hw

Journal:

Pharmacogenomics

Year:

2013

Language:

english

File:

PDF, 1.35 MB

english, 2013

40

[ACM Press the 2nd ACM international workshop - Barcelona, Spain (2013.10.21-2013.10.21)] Proceedings of the 2nd ACM international workshop on Geotagging and its applications in multimedia - GeoMM '13 - City-view image retrieval leveraging check-in data

Lee, Wen-Yu, Kuo, Yin-Hsi, Hsu, Winston H

Year:

2013

Language:

english

File:

PDF, 1.36 MB

english, 2013

41

Emerging technologies in extracellular vesicle-based molecular diagnostics

Jia, Shidong, Zocco, Davide, Samuels, Michael L, Chou, Michael F, Chammas, Roger, Skog, Johan, Zarovni, Natasa, Momen-Heravi, Fatemeh, Kuo, Winston Patrick

Journal:

Expert Review of Molecular Diagnostics

Year:

2014

Language:

english

File:

PDF, 669 KB

english, 2014

42

In Vitro Regulation of CCL3 and CXCL12 by Bacterial By-products Is Dependent on Site of Origin of Human Oral Fibroblasts

Sipert, Carla Renata, Morandini, Ana Carolina, Dionísio, Thiago José, Machado, Maria Aparecida Andrade Moreira, Oliveira, Sandra Helena Penha, Campanelli, Ana Paula, Kuo, Winston Patrick, Santos, Carl

Journal:

Journal of Endodontics

Year:

2014

Language:

english

File:

PDF, 976 KB

english, 2014

43

Familiality and clinical outcomes of sleep disturbances in major depressive and bipolar disorders

Lai, Yin-Chieh, Huang, Ming-Chyi, Chen, Hsi-Chung, Lu, Ming-Kun, Chiu, Yi-Hang, Shen, Winston W., Lu, Ru-Band, Kuo, Po-Hsiu

Journal:

Journal of Psychosomatic Research

Year:

2014

Language:

english

File:

PDF, 288 KB

english, 2014

44

Scalable Mobile Visual Classification by Kernel Preserving Projection Over High-Dimensional Features

Su, Yu-Chuan, Chiu, Tzu-Hsuan, Kuo, Yin-Hsi, Yeh, Chun-Yen, Hsu, Winston H.

Journal:

IEEE Transactions on Multimedia

Year:

2014

Language:

english

File:

PDF, 1.10 MB

english, 2014

45

Recombinant Porcine Lactoferrin Expressed in the Milk of Transgenic Mice Enhances Offspring Growth Performance

Wu, Shinn-Chih, Chen, Hsiao-Ling, Yen, Chih-Ching, Kuo, Meng-Fu, Yang, Tien-Shuh, Wang, Shih-Rong, Weng, Chung-Nan, Chen, Chuan-Mu, Cheng, Winston T. K.

Journal:

Journal of Agricultural and Food Chemistry

Year:

2007

Language:

english

File:

PDF, 676 KB

english, 2007

46

Strategies addressing barriers to clinical trial enrollment of underrepresented populations: A systematic review

Heller, Caren, Balls-Berry, Joyce E., Nery, Jill Dumbauld, Erwin, Patricia J., Littleton, Dawn, Kim, Mimi, Kuo, Winston P.

Journal:

Contemporary Clinical Trials

Year:

2014

Language:

english

File:

PDF, 328 KB

english, 2014

47

Scalable Mobile Video Retrieval with Sparse Projection Learning and Pseudo Label Mining

Wu, Guan-Long, Kuo, Yin-Hsi, Chiu, Tzu-Hsuan, Hsu, Winston H., Xie, Lexing

Journal:

IEEE Multimedia

Year:

2013

Language:

english

File:

PDF, 1.42 MB

english, 2013

48

[ACM Press the 21st ACM international conference - Barcelona, Spain (2013.10.21-2013.10.25)] Proceedings of the 21st ACM international conference on Multimedia - MM '13 - Real-time privacy-preserving moving object detection in the cloud

Chu, Kuan-Yu, Kuo, Yin-Hsi, Hsu, Winston H.

Year:

2013

Language:

english

File:

PDF, 1.23 MB

english, 2013

49

[IEEE 2012 IEEE International Conference on Multimedia and Expo (ICME) - Melbourne, Australia (2012.07.9-2012.07.13)] 2012 IEEE International Conference on Multimedia and Expo - Evaluating Gaussian Like Image Representations over Local Features

Su, Yu-Chuan, Wu, Guan-Long, Chiu, Tzu-Hsuan, Hsu, Winston H., Chang, Kuo-Wei

Year:

2012

Language:

english

File:

PDF, 363 KB

english, 2012

50

CYP1A2 genetic polymorphisms are associated with treatment response to the antidepressant paroxetine

Lin, Keh-Ming, Tsou, Hsiao-Hui, Tsai, I-Ju, Hsiao, Mei-Chun, Hsiao, Chin-Fu, Liu, Chia-Yih, Shen, Winston W, Tang, Hwa-Sheng, Fang, Chun-Kai, Wu, Chi-Shin, Lu, Shao-Chun, Kuo, Hsiang-Wei, Liu, Shu Chi

Journal:

Pharmacogenomics

Year:

2010

Language:

english

File:

PDF, 928 KB

english, 2010

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